gene prediction with AI

AI Data Analysis and Visualization

Industry: Life Science
Country: Poland
Scope of work: Custom neural network architectures, Scientific information mining, AI chatbot with knowledge base, Data Analysis, ML Models
Technology stack: PyTorch, OpenAI, Dash Plotly

Introduction

Read how AI Data Analysis can help improve disease detection 📈

Cancer remains one of the most formidable challenges in modern medicine, affecting millions of lives globally. While advancements in treatment have been significant, early detection and risk assessment are crucial for improving patient outcomes. Traditional methods of predicting cancer susceptibility often fall short, relying on limited data sets and outdated algorithms that can’t keep pace with the complexity of the disease.

This predictive accuracy gap hampers effective treatment and places a considerable burden on healthcare systems. Inaccurate or delayed risk assessment can lead to missed early intervention opportunities, escalating human and financial costs. Against this backdrop, Right Information initiated a groundbreaking study aimed at leveraging Artificial Intelligence (AI) to revolutionize data analysis and visualization.

Challenge

Overcoming Large Data Set Challenges with AI

Our objective was clear: to develop a cutting-edge AI algorithm capable of analyzing a multitude of factors to provide a more accurate, real-time assessment of cancer risk. By doing so, we aimed to empower healthcare providers with the tools they need to make informed decisions, thereby elevating the standard of care and potentially saving lives.

The intricacies of cancer susceptibility are not easily unraveled. Traditional methods often rely on a narrow set of variables, such as family history and certain genetic markers. However, these factors are just the tip of the iceberg. Cancer susceptibility is complex and involves a myriad of variables, including, but not limited to, genomic mutations, daily habits, and surrounding conditions.

Another challenge lies in the data itself—its volume, variety, and velocity. Healthcare systems are awash with data, but much of it is siloed or incompatible with other data sets. This fragmentation hampers the ability to draw comprehensive insights and makes it difficult to implement real-time, actionable solutions. The papers we studied highlight similar challenges, emphasizing the need for tools to integrate and make sense of disparate data types, including omic data and scientific literature.

Lastly, integrating AI data analytics solutions into existing healthcare infrastructures presents its own set of challenges. Many institutions operate on legacy systems not designed to handle the computational demands of advanced AI algorithms. This technological gap limits the adoption of innovative solutions and raises separate concerns about data security and compliance with healthcare regulations.

Solution

Building an Advanced AI Data Model

To address these multifaceted challenges, Right Information’s team developed an advanced AI data model designed to analyze a comprehensive range of variables. Our solution goes beyond traditional genetic markers and family history, incorporating environmental factors, lifestyle choices, and even real-time health metrics. This holistic approach allows for a more nuanced and accurate prediction of cancer susceptibility.

Our AI data analysis services are aimed to give a comprehensive toolset for predictive healthcare, offering specialized features for genome-wide analysis alongside other critical medical studies.

Here are some of the key genomic analysis features we came up with:

AI-based gene expression profiling

Identifies relevant genes for cancer prediction using a dataset from the recount2 project, a comprehensive resource that compiles gene expression data from multiple studies.

AI Model, AI Data Analysis

Top discriminating genes

Ranks over 55,000 genes based on their importance for examined cancer types.

AI Data Analysis and Visualization

Interactive data visualization

Provides a visual representation of scientific literature, linking correlations between specific genes and cancer types.

knowledge graph data visualization

Knowledge base summarization

Offers high-level insights from over 10,000 publications on related topics like gene expressions in thyroid cancer, protein-ccRCC relationships, etc.

Knowledge grapf summary

To further enhance the user experience and research capabilities, we’ve integrated a unique feature into our platform. This feature is a contextual AI chatbot designed to interact within the scope of selected scientific publications.

For domain experts and researchers, our smart chatbot is a time-saving tool that gets straight to the point. Traditional scientific publications can span dozens of pages, requiring significant time and effort to sift through. But our AI chatbot helps to bypass this burdensome process. Users can simply type questions into the chat interface to receive specific information extracted directly from a chosen publication.

Our AI solution provides special tools that help break down barriers caused by separate data systems in healthcare. Consequently, it works with many types of data, allowing for instant analysis. As a result, healthcare providers receive up-to-date information, which aids them in making better decisions.

Recognizing the limitations of legacy systems in many healthcare institutions, we engineered our solution to be both scalable and adaptable. It’s designed to integrate seamlessly with existing infrastructures, requiring minimal operational overhaul. Moreover, we’ve implemented robust security measures and ensured compliance with healthcare regulations, mitigating concerns about data integrity and patient privacy.

chat AI bot

Outcome

The results of AI Data Analysis and Visualization

The outcomes of our Analysis and Visualization are profound. Preliminary tests and pilot studies have shown a marked improvement in predictive accuracy, translating to more effective early interventions. 

Right Information provides end-to-end AI-based data analysis services tailored to the unique needs of various sectors:

  • For Pharma: Our AI-driven models aid in target identification by screening potential targets and linking them with relevant literature. They also have applications in streamlining clinical trials.

  • For Biotech: Similarly, the focus here is on target identification, but with an emphasis on specialized biotechnological applications.

  • For Universities: Our data science services offer insights into complex ‘omic’ datasets, aiding academic research.

  • For Publishing Scientists: The AI data mining system keeps researchers up-to-date with the most important literature publications in their field.

Our model complements the analysis of AI-analyzed ‘omic’ data by increasing the efficiency of literature mining. This enables a better understanding of the results, puts them in a biological context, and guides further research.

The case study presented here is just a demonstration of a universal process that can be applied to any research, focusing attention on the right insights. Furthermore, looking ahead, we see the potential for automating the entire process, including data exploration and visualization, based on the most relevant and up-to-date literature.

By achieving these outcomes, we’re changing how cancer susceptibility is assessed. More importantly, we’re redefining the standards for predictive healthcare and opening new ways for research and application in the biomedical field through effective AI implementation.

Empower LifeScience with AI Insights Today!

 

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